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To install the 3motif package, perform the following steps: 1. From this web page, download '3motif-2.0.tar.gz' 2. In a convenient location, uncompress and unpack the software by typing: gunzip 3motif-2.0.tar.gz tar -xvf 3motif-2.0.tar This creates a directory ./3motif-2.0 containing the distribution files. 3. Change directories into the 3motif-2.0 directory that was just created. 4. Open and carefully read the README file there for instructions. ** NOTE: You will probably need to download the pdb-xx-20xx.tar file as well - the README file will give you the necessary details. ----------------------------------------------------------------------------- To cite this work, use the following reference: Steven P. Bennett, Craig G. Nevill-Manning, and Douglas L. Brutlag, "3motif: Visualizing Conserved Protein Sequence Motifs in the Protein Structure Database." Bioinformatics, Vol. 19 no. 4 2003, 541-542. Please send questions and comments to one of the following people: Steven P. Bennett (encino@stanford.edu) if before 12/2002 Douglas L. Brutlag (http://cmgm.stanford.edu/~brutlag) if after 01/2003 |